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🧲 Protein Science · Method

Immunoprecipitation (IP)

Antibody pull-down of interactions
🎯 Difficulty ★★☆ Medium Duration About 1 day 🎯 Use Enrich target protein and its binding partners from lysate to validate protein interactions
📖 Principle
Antibody binds target protein, coupled to beads/agarose for pull-down, washed and eluted for analysis
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📋 Workflow

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1

Cell lysis

30 min
Lyse cells with gentle detergent lysis buffer to preserve protein interactions
💡 Tip Mild detergents preserve interactions
⚠️ Caution Keep cold with protease inhibitors
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2

Antibody coupling

2 h
Couple specific antibody to Protein A/G beads or agarose, block non-specific binding
💡 Tip Include isotype IgG control
⚠️ Caution Rotate gently to avoid settling
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3

Co-immunoprecipitation

Overnight
Incubate lysate with antibody-beads overnight to pull down target and its partners
💡 Tip Longer incubation enhances capture
⚠️ Caution Avoid harsh salt/detergent breaking interactions
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4

Wash, elute and analyze

2 h
Wash repeatedly to remove non-specifics, elute with elution buffer, analyze by SDS-PAGE/WB or MS
💡 Tip Verify interaction by WB with other antibodies
⚠️ Caution Elute thoroughly to avoid carryover
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⚠️ 5 Common Beginner Mistakes

  • Non-specific binding causes high background
  • Poor antibody specificity yields false interactions
  • Harsh detergent disrupts weak interactions
  • Insufficient washing leaves contaminants
  • Missing isotype control hinders specificity

❓ FAQ

+IP vs Co-IP?
IP enriches one target; Co-IP captures its partners to validate interactions.
+How to reduce background?
Pre-clear lysate, stringent washes, isotype control and optimal antibody.
+Magnetic beads or agarose?
Magnetic beads are faster/easier to separate; agarose suits classic protocols.

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Data authenticity: Product categories from JW Supply Chain standard taxonomy; method→step→product connected. Last updated: 2026-08-23 · v3.0