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🧬 Molecular Biology · Method

Fluorescence in situ Hybridization (FISH)

In situ fluorescent detection of sequences
🎯 Difficulty ★★☆ Medium Duration About 1–2 days 🎯 Use Detect specific DNA/RNA sequences, gene amplification and chromosome aberrations in situ
📖 Principle
Fluorescent probes hybridize to complementary target sequences, revealing location and copy number in situ
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📋 Workflow

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1

Sample preparation and pretreatment

2 h
Fix cells/tissue sections, digest with protease to enhance probe accessibility
💡 Tip Optimize protease digestion per sample
⚠️ Caution Over-digestion ruins morphology
🧪 Materials for this step (click to shop by spec/brand)
2

Probe hybridization

Overnight
Denature then add fluorescent probe, hybridize overnight at appropriate temperature
💡 Tip Hybridization temperature depends on probe GC/length
⚠️ Caution Moderate probe amount avoids background
🧪 Materials for this step (click to shop by spec/brand)
3

Washing

1 h
Wash with stringency-gradient buffers to remove non-specifically bound probes
💡 Tip Stringent washing improves signal/noise
⚠️ Caution Over-washing loses signal
🧪 Materials for this step (click to shop by spec/brand)
4

Counterstain and imaging

30 min
Counterstain nuclei with DAPI, image by fluorescence/confocal microscopy and analyze signals
💡 Tip DAPI reveals chromosomes and nuclear morphology
⚠️ Caution Antifade mountant aids imaging
🧪 Materials for this step (click to shop by spec/brand)

⚠️ 5 Common Beginner Mistakes

  • Over-digestion ruins morphology
  • Wrong temp/buffer weakens signal
  • Over-washing loses specific signal
  • Probe-target mismatch causes false negatives
  • Photobleaching affects quantification

❓ FAQ

+FISH vs PCR detection?
FISH gives in situ location/copy number; PCR more sensitive but needs extracted DNA.
+How to boost signal?
Optimize digestion, longer hybridization or signal amplification (TSA).
+Can multiple targets be detected?
Yes, with multicolor probes or multiple fluorophores on one slide.

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Data authenticity: Product categories from JW Supply Chain standard taxonomy; method→step→product connected. Last updated: 2026-08-23 · v3.0